Bacteria Antibiotics and Immunity

Logo IPL

Université de Lille – CNRS UMR 9017 – Inserm U1019 – Institut Pasteur de Lille – CHU de Lille

The team aims to understand the molecular and cellular interactions between pneumonia-causing bacteria and the respiratory immune system while developing innovative immuno-interventions to combat bacterial pneumonia, particularly in the face of antibiotic resistance and antigen variation. A first research axis is identifying virulence factors of S. pneumoniae and K. pneumoniae and understanding host immune responses, particularly the role of myeloid cells in infection control and elimination (EU project NOSEVAC). Myeloid cell development and activation during nasal carriage, pneumonia, and pneumosepsis are critical areas of investigation, with the goal of identifying novel therapeutic targets. The team also explores immune-modulating drugs, such as innate immunity agonists, to enhance host defense mechanisms against antibiotic-resistant bacteria (EU project FAIR). Combining these with antibiotics may provide a synergistic “double-hit” strategy for pathogen clearance while promoting tissue repair. Lastly, the team aim to develop infection-preventing mucosal vaccines targeting nasopharyngeal carriage and pneumonia, addressing current vaccine limitations and reducing bacterial transmission, thus contributing to the global fight against antimicrobial resistance (EU project NOSEVAC).

Projets

Identify virulence factors of S. pneumoniae and K. pneumoniae and myeloid cell-associated protective innate immune responses

The aim is to identify bacterial factors essential for airway colonization and characterize host innate immune responses to S. pneumoniae and K. pneumoniae. Using transcriptomics, proteomics, and CRISPRi-seq in animal and human models, the study will pinpoint conserved bacterial proteins critical for nasal and lung
colonization. Functional studies will assess their role in infection and disease progression. Additionally, multiOmics and systems biology approaches will elucidate immune responses in infected tissues.

Principal investigators: Christelle Faveeuw, Laurye Van Maele, Jean-Claude Sirard

Develop targeted immunotherapies to treat bacterial pneumonia

This research aims to enhance immune defense against bacterial pneumonia by combining innate immune stimulators with antibiotics to improve pathogen clearance and combat antibiotic resistance. The team is developing a flagellin aerosol therapy (FLAMOD) to complement antibiotics for drug-resistant pneumonia, assessing its efficacy in animal models and a phase 1 clinical trial. Additionally, the research aims to stimulate IL-17 and IL-22 production in the airways by targeting dendritic cells with a monoclonal antibody and recombinant flagellin. This strategy will be tested in models of K. pneumoniae and S. pneumoniae infections, with a focus on enhancing bacterial clearance and evaluating combination treatments with antibiotics.

Principal investigators: Laurye Van Maele, Jean-Claude Sirard, Christelle Faveeuw

Produce next-generation respiratory adjuvants and vaccines against nasopharyngeal carriage and pneumonia

This research focuses on developing innovative nasal vaccines to prevent respiratory infections, including S. pneumoniae, by targeting the nasal and lung tissue, which contain key immune components tissue-resident memory T and B lymphocytes. Unlike traditional vaccines that induce systemic immunity, nasal vaccines stimulate local immune responses at the site of infection. The project will identify key immune drivers in the airways and evaluate vaccine efficacy using antigens identified in axis 1.

Principal investigators: Anne Rogel, Christophe Carnoy, Laurye Van Maele, Jean-Claude Sirard

Membres

Christophe CARNOY

Professeur Univ Lille, investigateur principal

N. ORCID : 0000-0003-2047-5153

Delphine CAYET

Engineer, IPL

N. ORCID : 0000-0003-1720-0845

CHATAGNON Jonathan

Engineer, IPL

N. ORCID : 0000-0003-0496-8548

Christelle FAVEEUW

CR Inserm, responsable scientifique

N. ORCID : 0000-0002-8373-3992

FRYDER Margot

PhD Student

GEOGEL Anne-France

PhD, PharmD, GHICL

GODART Celestin

PhD Student

LI Xing

Étudiante en thèse, iSite, Univ Lille

MATARAZZO Laura

Post Doc

N. ORCID : 0000-0002-7298-6898

ROGEL Anne

Assistant Professor, University of Lille

N. ORCID : 0000-0002-8788-566X

RUDANT Eva

PhD Student

SACHET Lisa

PhD Student

Jean-Claude SIRARD

Chercheur Inserm, responsable d’équipe

N. ORCID : 0000-0001-9854-4652

Daphnée SOULARD

Chargée d’études, IPL

VAN MAEL Laurye

Chercheure post-doctorante, Inserm

N. ORCID : 0000-0001-9495-5403

WALLET Frédéric

Médecin biologiste, CHU Lille

ZEROUAL Yasmine

PhD Student

Contact d'équipe

Jean-Claude SIRARD

Chercheur Inserm, responsable d’équipe

N. ORCID : 0000-0001-9854-4652

Publications

(2026) Flagellin nebulization enhances respiratory immune responses in the porcine model.

Baldry M, Caballero I, Ruuls L, Cayet D, Zeroual Y, Costa C, Beury D, Hot D, Le Vern Y, Heuze-Vourc'h N, MacLoughlin R, Benecke AG, Stockhofe-Zurwieden N, Sirard JC.

2025. Neutrophil subsets enhance the efficacy of host-directed therapy in pneumococcal pneumonia.

Matarazzo L, Costa C, Porte R, Saliou JM, Figeac M, Delahaye F, Bonnefond A, Kloeckner B, Silvin A, Ginhoux F, Faveeuw C, Baldry M, Carnoy C, Sirard JC.

2025. Rev-erb-alpha antagonism in alveolar macrophages protects against pneumococcal infection in elderly mice.

Silva Angulo F, Joseph CV, Delval L, Deruyter L, Heumel S, Bicharel M, Rodrigues PB, Sencio V, Bourguignon T, Machado MG, Fourcot M, Delhaye S, Salome-Desnoulez S, Valet P, Adnot S, Wolowczuk I, Sirard JC, Pichavant M, Staels B, Haas JT, Gref R, Vandel J, Machelart A, Duez H, Pourcet B, Trottein F.

. 2025. Physicochemical stability of a polysorbate-80-containing solvent compounded in the hospital pharmacy and used to reconstitute a biologic for nebulisation.

Negrier L, Roche M, Lannoy D, Berneron C, Pacqueu L, Carnoy C, Guillon A, Hamze B, Sirard JC, Decaudin B, Odou P, Danel C.

2025. Mutagenesis to Orient Conjugation and Preserve Self-adjuvant Properties of Flagellin in Conjugates.

Laneque L, Lambert A, Cayet D, Gilleron C, Courtois E, Cloteau C, Broussard C, Annic B, Bessonnet T, Camberlein E, Sirard JC, Grandjean C.

2024. Amoxicillin treatment of pneumococcal pneumonia impacts bone marrow neutrophil maturation and function.

Mondeme M, Zeroual Y, Soulard D, Hennart B, Beury D, Saliou JM, Carnoy C, Sirard JC, Faveeuw C.

2024. A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection.

Liu X, Van Maele L, Matarazzo L, Soulard D, Alves Duarte da Silva V, de Bakker V, Denereaz J, Bock FP, Taschner M, Ou J, Gruber S, Nizet V, Sirard JC, Veening JW.

2024. Triggering Toll-Like Receptor 5 Signaling During Pneumococcal Superinfection Prevents the Selection of Antibiotic Resistance.

Costa C, Sirard JC, Gibson PS, Veening JW, Gjini E, Baldry M.

2024. Targeted delivery of flagellin by nebulization offers optimized respiratory immunity and defense against pneumococcal pneumonia.

Baldry M, Costa C, Zeroual Y, Cayet D, Pardessus J, Soulard D, Wallet F, Beury D, Hot D, MacLoughlin R, Heuze-Vourc'h N, Sirard JC, Carnoy C.

2024. Pyridylpiperazine efflux pump inhibitor boosts in vivo antibiotic efficacy against K. pneumoniae.

Vieira Da Cruz A, Jimenez-Castellanos JC, Bornsen C, Van Maele L, Compagne N, Pradel E, Muller RT, Meurillon V, Soulard D, Piveteau C, Biela A, Dumont J, Leroux F, Deprez B, Willand N, Pos KM, Frangakis AS, Hartkoorn RC, Flipo M.

2023. Treatment of Bacterial Infections with beta-Lactams: Cooperation with Innate Immunity.

Mondeme M, Carnoy C, Sirard JC, Faveeuw C

2022. TLR5 signalling is hyper-responsive in porcine cystic fibrosis airways epithelium

Fleurot I, Lopez-Galvez R, Barbry P, Guillon A, Si-Tahar M, Bahr A, Klymiuk N, Sirard JC, Caballero I.

2022. Fcgamma receptor-mediated cross-linking codefines the immunostimulatory activity of anti-human CD96 antibodies.

Rogel A, Ibrahim FM, Thirdborough SM, Renart-Depontieu F, Birts CN, Buchan SL, Preville X, King EV, Al-Shamkhani A

2021. Airway Administration of Flagellin Regulates the Inflammatory Response to Pseudomonas aeruginosa.

Lopez-Galvez R, Fleurot I, Chamero P, Trapp S, Olivier M, Chevaleyre C, Barc C, Riou M, Rossignol C, Guillon A, Si-Tahar M, May T, Barbry P, Bahr A, Klymiuk N, Sirard JC, Caballero I.

2021. Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq.

Liu X, Kimmey JM, Matarazzo L, de Bakker V, Van Maele L, Sirard JC, Nizet V, Veening JW.

2021. A Model-Based Pharmacokinetic/Pharmacodynamic Analysis of the Combination of Amoxicillin and Monophosphoryl Lipid A Against S. pneumoniae in Mice.

Franck S, Michelet R, Casilag F, Sirard JC, Wicha SG, Kloft C.

2021. The Biosynthetic Monophosphoryl Lipid A Enhances the Therapeutic Outcome of Antibiotic Therapy in Pneumococcal Pneumonia.

Casilag F, Matarazzo L, Franck S, Figeac M, Michelet R, Kloft C, Carnoy C, Sirard JC.

2021. Tristetraprolin expression by keratinocytes protects against skin carcinogenesis.

Assabban A, Dubois-Vedrenne I, Van Maele L, Salcedo R, Snyder BL, Zhou L, Azouz A, de Toeuf B, Lapouge G, La C, Melchior M, Nguyen M, Thomas S, Wu SF, Hu W, Kruys V, Blanpain C, Trinchieri G, Gueydan C, Blackshear PJ, Goriely S.

2020. The GM-CSF Released by Airway Epithelial Cells Orchestrates the Mucosal Adjuvant Activity of Flagellin.

Vijayan A, Van Maele L, Fougeron D, Cayet D, Sirard JC.

2020. Synthetic gene-regulatory networks in the opportunistic human pathogen Streptococcus pneumoniae.

Sorg RA, Gallay C, Van Maele L, Sirard JC, Veening JW.

2020. Gut Dysbiosis during Influenza Contributes to Pulmonary Pneumococcal Superinfection through Altered Short-Chain Fatty Acid Production.

Sencio V, Barthelemy A, Tavares LP, Machado MG, Soulard D, Cuinat C, Queiroz-Junior CM, Noordine ML, Salome-Desnoulez S, Deryuter L, Foligne B, Wahl C, Frisch B, Vieira AT, Paget C, Milligan G, Ulven T, Wolowczuk I, Faveeuw C, Le Goffic R, Thomas M, Ferreira S, Teixeira MM, Trottein F.

2019. Toll-like receptor 4 signaling in hematopoietic-lineage cells contributes to the enhanced activity of the human vaccine adjuvant AS01.

Van Maele L, Fougeron D, Cayet D, Chalon A, Piccioli D, Collignon C, Sirard JC, Didierlaurent AM.

2019. Therapeutic Synergy Between Antibiotics and Pulmonary Toll-Like Receptor 5 Stimulation in Antibiotic-Sensitive or -Resistant Pneumonia.

Matarazzo L, Casilag F, Porte R, Wallet F, Cayet D, Faveeuw C, Carnoy C, Sirard JC.

2019. Toll-like receptor 5 agonist flagellin reduces influenza A virus replication independently of type I interferon and interleukin 22 and improves antiviral efficacy of oseltamivir.

Georgel AF, Cayet D, Pizzorno A, Rosa-Calatrava M, Paget C, Sencio V, Dubuisson J, Trottein F, Sirard JC, Carnoy C.

2019. A rapid, simple and sensitive liquid chromatography tandem mass spectrometry assay to determine amoxicillin concentrations in biological matrix of little volume.

Franck S, Fuhrmann-Selter T, Joseph JF, Michelet R, Casilag F, Sirard JC, Wicha SG, Kloft C.

2019. Recombinant flagellins with deletions in domains D1, D2, and D3: Characterization as novel immunoadjuvants.

Biedma ME, Cayet D, Tabareau J, Rossi AH, Ivicak-Kocjan K, Moreno G, Errea A, Soulard D, Parisi G, Jerala R, Berguer P, Rumbo M, Sirard JC.

2018. Compartmentalized Antimicrobial Defenses in Response to Flagellin.

Vijayan A, Rumbo M, Carnoy C, Sirard JC.

2018. Alteration of Flt3-Ligand-dependent de novo generation of conventional dendritic cells during influenza infection contributes to respiratory bacterial superinfection.

Beshara R, Sencio V, Soulard D, Barthelemy A, Fontaine J, Pinteau T, Deruyter L, Ismail MB, Paget C, Sirard JC, Trottein F, Faveeuw C.